Publications


Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus

Wollenberg KR, Desjardins CA, Zalutskaya A, Slodovnikova V, Oler AJ, Quinones M, Abeel T, Chapman SB, Tartakovsky M, Gabrielian A, Hoffner S, Skrahin A, Birren BW, Rosenthal A, Skrahina A, Earl AM. J Clin Microbiol. 2017.


The TB Portals: An open-access, web-based platform for global drug-resistant tuberculosis data sharing and analysis

Rosenthal A, Gabrielian A, Engle E, Hurt DE, Alexandru S, Crudu V, Sergueev E, Kirichenko V, Lapitskii V, Snezhko E, Kovalev V, Astrovko A, Skrahina A, Taaffe J, Harris M, Long A, Wollenberg K, Akhundova I, Ismayilova S, Skrahin A, Mammadbayov E, Gadirova H, Abuzarov R, Seyfaddinova M, Avaliani Z, Strambu I, Zaharia D, Muntean A, Ghita E, Bogdan M, Mindru R, Spinu V, Sora A, Ene C, Vashakidze S, Shubladze N, Nanava U, Tuzikov A, Tartakovsky M. J Clin Microbiol. 2017 Sep 13.


Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance

Manson AL, Cohen KA, Abeel T, Desjardins CA, Armstrong DT, Barry CE, 3rd, Brand J, Consortium TBGG, Chapman SB, Cho SN, Gabrielian A, Gomez J, Jodals AM, Joloba M, Jureen P, Lee JS, Malinga L, Maiga M, Nordenberg D, Noroc E, Romancenco E, Salazar A, Ssengooba W, Velayati AA, Winglee K, Zalutskaya A, Via LE, Cassell GH, Dorman SE, Ellner J, Farnia P, Galagan JE, Rosenthal A, Crudu V, Homorodean D, Hsueh PR, Narayanan S, Pym AS, Skrahina A, Swaminathan S, Van der Walt M, Alland D, Bishai WR, Cohen T, Hoffner S, Birren BW, Earl AM. Nat Genet 49:395-402. 2017.


Examining the ability of convolutional neural networks to detect lesions in lung CT images

Liauchuk V, Kovalev V, Kalinovsky A, Tarasau A, Gabrielian A, Rosenthal A. Proceedings of International Congress on Computer Assisted Radiology and Surgery. 2017.


Methods for Genome-Wide Analysis of MDR and XDR Tuberculosis from Belarus

Sergeev R, Kavaliou I, Gabrielian A, Rosenthal A, Tuzikov A. Bioinformatics Research and Applications, Isbra 2016 9683:258-268. 2016.


Utilizing radiological images for predicting drug resistance of lung tuberculosis

Kovalev V, Liauchuk V, Kalinovsky A, Rosenthal A, Gabrielian A, Skrahina A, Astrauko A, Tarasau A. International Journal of Computer Assisted Radiology and Surgery 10:1-312. 2015.


Automatic Tuberculosis Screening Using Chest Radiographs

Jaeger S, Karargyris A, Candemir S, Folio L, Siegelman J, Callaghan F, Xue Z, Palaniappan K, Singh RK, Antani S, Thoma G, Wang Y-X, Lu P-X, McDonald CJ. IEEE Transactions on Medical Imaging 33:233-245. 2014.


PET/CT imaging correlates with treatment outcome in patients with multidrug-resistant tuberculosis

Chen, R. Y., Dodd, L. E., Lee, M., Paripati, P., Hammoud, D. A., Mountz, J. M., Jeon, D., Zia, N., Zahiri, H., Coleman, M. T., Carroll, M. W., Lee, J. D., Jeong, Y. J., Herscovitch, P., Lahouar, S., Tartakovsky, M., Rosenthal, A., Somaiyya, S., Lee, S., Goldfeder, L. C., Cai, Y., Via, L. E., Park, S. K., Cho, S. N. and Barry, C. E, III. Sci Transl Med.;6(265):265ra166. 2014